![]() ![]() join ( DATA_FOLDER, "regulons.p" ) MOTIFS_FNAME = os. join ( RESOURCES_FOLDER, "GSE60361_C1-3005-Expression.txt" ) REGULONS_FNAME = os. join ( RESOURCES_FOLDER, 'mm_tfs.txt' ) SC_EXP_FNAME = os. ![]() join ( RESOURCES_FOLDER, "motifs-v9-nr.mgi-m0.001-o0.0.tbl" ) MM_TFS_FNAME = os. join ( DATABASE_FOLDER, "mm9-*.mc9nr.feather" ) MOTIF_ANNOTATIONS_FNAME = os. Import os import glob import pickle import pandas as pd import numpy as np from dask.diagnostics import ProgressBar from arboreto.utils import load_tf_names from arboreto.algo import grnboost2 from ctxcore.rnkdb import FeatherRankingDatabase as RankingDatabase from pyscenic.utils import modules_from_adjacencies, load_motifs from pyscenic.prune import prune2df, df2regulons from cell import aucell import seaborn as sns DATA_FOLDER = "~/tmp" RESOURCES_FOLDER = "~/resources" DATABASE_FOLDER = "~/databases/" SCHEDULER = "123.122.8.24:8786" DATABASES_GLOB = os.
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